diffusePDE: Function for diffusion of the Substance matrix

In euba/BacArena: Modeling Framework for Cellular Communities in their Environments

Function for diffusion of the Substance matrix

Description

The generic function diffusePDE implements the diffusion by the solving diffusion equation.

Usage

diffusePDE(object, init_mat, gridgeometry, lrw = NULL, tstep)

## S4 method for signature 'Substance'
diffusePDE(object, init_mat, gridgeometry, lrw = NULL, tstep)

Arguments

object	An object of class Substance.
init_mat	A matrix with values to be used by the diffusion.
gridgeometry	A list specifying the geometry of the Arena
lrw	A numeric value needed by solver to estimate array size (by default lwr is estimated in simEnv() by the function estimate_lrw())
tstep	A numeric value giving the time step of integration

Details

Partial differential equation is solved to model 2d diffusion process in the arena.

See Also

Substance-class and diffuseR

euba/BacArena documentation built on Aug. 29, 2024, 11:15 p.m.