checkPhen_par: Function for checking phenotypes in the environment

In euba/BacArena: Modeling Framework for Cellular Communities in their Environments

Function for checking phenotypes in the environment

Description

The generic function checkPhen_par checks and adds the phenotypes of organisms in the environment.

Usage

checkPhen_par(object, org, cutoff = 1e-06, fbasol)

## S4 method for signature 'Arena'
checkPhen_par(object, org, cutoff = 1e-06, fbasol)

Arguments

object	An object of class Arena.
org	An object of class Organism.
cutoff	A number giving the cutoff for values of the objective function and fluxes of exchange reactions.
fbasol	Problem object according to the constraints and then solved with optimizeProb.

euba/BacArena documentation built on Aug. 29, 2024, 11:15 p.m.