getArena | R Documentation |
The generic function getArena
re-constructs an Arena
object from a simulation step within an Eval
object.
getArena(object, time = (length(object@medlist) - 1))
## S4 method for signature 'Eval'
getArena(object, time = (length(object@medlist) - 1))
object |
An object of class Eval. |
time |
A number giving the simulation step of interest. |
The function addEval
can be used to manipulate an Arena
object from a simulation step to modify the subsequent simulation steps.
Returns an object of class Arena
containing the organisms and substance conditions in simulation step time
.
Eval-class
and Arena-class
data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
arena <- addSubs(arena,40) #add all possible substances
eval <- simEnv(arena,5)
arena5 <- getArena(eval,5)
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