getCorrM: Function to compute and return correlation matrix

In euba/BacArena: Modeling Framework for Cellular Communities in their Environments

Function to compute and return correlation matrix

Description

The generic function getCorrM returns the correlation matrix of several objects.

Usage

getCorrM(object, reactions = TRUE, bacs = TRUE, substrates = TRUE)

## S4 method for signature 'Eval'
getCorrM(object, reactions = TRUE, bacs = TRUE, substrates = TRUE)

Arguments

object	An object of class Eval.
reactions	A boolean indicating whether reactions should be included in correlation matrix
bacs	A boolean indicating whether bacteria should be included in correlation matrix
substrates	A boolean indicating whether substrates should be included in correlation matrix

Details

Returns correlation matrix which can be used for statistical analysis

Value

correlation matrix

See Also

Eval-class

Examples

data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
           minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
arena <- addSubs(arena,40) #add all possible substances
eval <- simEnv(arena,5)
getCorrM(eval)

euba/BacArena documentation built on March 27, 2024, 2:33 p.m.