getCorrM | R Documentation |
The generic function getCorrM
returns the correlation matrix of several objects.
getCorrM(object, reactions = TRUE, bacs = TRUE, substrates = TRUE)
## S4 method for signature 'Eval'
getCorrM(object, reactions = TRUE, bacs = TRUE, substrates = TRUE)
object |
An object of class Eval. |
reactions |
A boolean indicating whether reactions should be included in correlation matrix |
bacs |
A boolean indicating whether bacteria should be included in correlation matrix |
substrates |
A boolean indicating whether substrates should be included in correlation matrix |
Returns correlation matrix which can be used for statistical analysis
correlation matrix
Eval-class
data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
arena <- addSubs(arena,40) #add all possible substances
eval <- simEnv(arena,5)
getCorrM(eval)
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