addEssentialMed: Add minimal medium of an organism to arena.

In euba/BacArena: Modeling Framework for Cellular Communities in their Environments

Add minimal medium of an organism to arena.

Description

The generic function addEssentialMed uses flux variability analysis to determine a essential growth medium components.

Usage

addEssentialMed(object, org, only_return = FALSE, limit = 10)

## S4 method for signature 'Arena'
addEssentialMed(object, org, only_return = FALSE, limit = 10)

Arguments

object	An object of class Arena.
org	An object of class Organism
only_return	Set true if essential metabolites should only be returned but not added to arena
limit	A metabolite is considered as essential if its remove whould decrease biomass growth below limit (between 0,100; default 10%)

euba/BacArena documentation built on March 27, 2024, 2:33 p.m.