Files in euba/BacArena
Modeling Framework for Cellular Communities in their Environments

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/Arena.R R/BacArena.R R/Organism.R R/RcppExports.R R/Stuff.R R/Substance.R R/data.R README.md
data/bcoli_orth.RData
data/colpal.R
data/poa2.RData
data/sihumi_test.rda
examples/dev.R examples/ecoli.R examples/sihumi_test.R examples/simple_parallel.R man/Arena-class.Rd man/Arena-constructor.Rd man/Bac-Constructor.Rd man/Bac.Rd man/BacArena.Rd man/Eval-class.Rd man/Eval-constructor.Rd man/HeatMapFeeding.Rd man/Human-constructor.Rd man/Human.Rd man/NemptyHood.Rd man/Organism-constructor.Rd man/Organism.Rd man/Substance-constructor.Rd man/Substance.Rd man/addDefaultMed.Rd man/addEssentialMed.Rd man/addEval.Rd man/addOrg.Rd man/addSubs.Rd man/cellgrowth.Rd man/changeDiff.Rd man/changeFobj.Rd man/changeOrg.Rd man/changeSub.Rd man/checkCorr.Rd man/checkPhen.Rd man/checkPhen_par.Rd man/chemotaxis.Rd man/colpal1.Rd man/colpal2.Rd man/colpal3.Rd man/colpal4.Rd man/colpal5.Rd man/colpal6.Rd man/constrain.Rd man/consume.Rd man/createGradient.Rd man/dat2mat.Rd man/diffuse.Rd man/diffusePDE.Rd man/diffuseR.Rd man/diffuse_par.Rd man/emptyHood.Rd man/evalArena.Rd man/extractMed.Rd man/findFeeding.Rd man/findFeeding2.Rd man/findFeeding3.Rd man/findFeeding3rep.Rd man/findInArena.Rd man/findRxnFlux.Rd man/findrBiomass.Rd man/flushSubs.Rd man/fluxVarSim.Rd man/getArena.Rd man/getCorrM.Rd man/getPhenoMat.Rd man/getPhenotype.Rd man/getSubHist.Rd man/getSublb.Rd man/getVarSubs.Rd man/growExp.Rd man/growLin.Rd man/growth.Rd man/growth_par.Rd man/lsd.Rd man/lysis.Rd man/minePheno.Rd man/move.Rd man/openArena.Rd man/optimizeLP.Rd man/plotAbundance.Rd man/plotCurves.Rd man/plotCurves2.Rd man/plotFVA.Rd man/plotFluxVar.Rd man/plotGrowthCurve.Rd man/plotInterNum.Rd man/plotPhenCurve.Rd man/plotPhenNum.Rd man/plotReaActivity.Rd man/plotShadowCost.Rd man/plotSpecActivity.Rd man/plotSubCurve.Rd man/plotSubDist.Rd man/plotSubDist2.Rd man/plotSubUsage.Rd man/plotSubVar.Rd man/plotTotFlux.Rd man/redEval.Rd man/reset_screen.Rd man/rmSubs.Rd man/selPheno.Rd man/setKinetics.Rd man/sihumi_test.Rd man/simBac.Rd man/simBac_par.Rd man/simEnv.Rd man/simEnv_par.Rd man/simHum.Rd man/statPheno.Rd man/stirEnv.Rd man/unit_conversion.Rd man/usd.Rd
model/Bcoli_iAF1260.RData
model/Bs_iYO844_flux1.xml
model/Bsub_minimal_medium.xlsx
model/Bsub_model.RData
model/ecoli_iJO1366.RData
model/iSMUL-20150520-smul33.xml
model/iSMUL-20150609-smul33.xml
model/modelPOA.xml
model/modelPOA_new.xml
model/poa_minimal_medium.csv
model/poa_model.RData
model/poa_model_new.RData
model/smul_model.RData
src/RcppExports.cpp
src/addBac.cpp
src/diff.cpp
src/duplicate.cpp
src/move.cpp
vignettes/BacArena-Introduction.Rmd vignettes/BacArena-Introduction.pdf
euba/BacArena documentation built on Dec. 8, 2018, 9:29 p.m.