Files in euba/BacArena
Modeling Framework for Cellular Communities in their Environments
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/Arena.R
R/BacArena.R
R/Organism.R
R/RcppExports.R
R/Stuff.R
R/Substance.R
R/data.R
R/matlab.R
README.md
data/colpal.R
data/ecoli.rda
data/poa2.RData
data/sihumi_test.rda
examples/dev.R
examples/ecoli.R
examples/sihumi_test.R
examples/simple_parallel.R
man/Arena-class.Rd
man/Arena-constructor.Rd
man/Bac-Constructor.Rd
man/Bac.Rd
man/BacArena.Rd
man/Eval-class.Rd
man/Eval-constructor.Rd
man/Human-constructor.Rd
man/Human.Rd
man/NemptyHood.Rd
man/Organism-constructor.Rd
man/Organism.Rd
man/Substance-constructor.Rd
man/Substance.Rd
man/addDefaultMed.Rd
man/addEssentialMed.Rd
man/addEval.Rd
man/addOrg.Rd
man/addSubs.Rd
man/bacarena.png
man/cellgrowth.Rd
man/changeDiff.Rd
man/changeFobj.Rd
man/changeOrg.Rd
man/changeSub.Rd
man/checkCorr.Rd
man/checkPhen.Rd
man/checkPhen_par.Rd
man/chemotaxis.Rd
man/colpal1.Rd
man/colpal2.Rd
man/colpal3.Rd
man/colpal4.Rd
man/colpal5.Rd
man/colpal6.Rd
man/constrain.Rd
man/consume.Rd
man/createGradient.Rd
man/dat2mat.Rd
man/diffuse.Rd
man/diffusePDE.Rd
man/diffuseR.Rd
man/diffuse_par.Rd
man/emptyHood.Rd
man/evalArena.Rd
man/extractMed.Rd
man/findFeeding.Rd
man/findFeeding2.Rd
man/findFeeding3.Rd
man/findFeeding3rep.Rd
man/findInArena.Rd
man/findRxnFlux.Rd
man/findrBiomass.Rd
man/flushSubs.Rd
man/fluxVarSim.Rd
man/getArena.Rd
man/getCorrM.Rd
man/getPhenoMat.Rd
man/getPhenotype.Rd
man/getSubHist.Rd
man/getSublb.Rd
man/getVarSubs.Rd
man/growExp.Rd
man/growLin.Rd
man/growth.Rd
man/growth_par.Rd
man/lsd.Rd
man/lysis.Rd
man/minePheno.Rd
man/move.Rd
man/openArena.Rd
man/optimizeLP.Rd
man/plotAbundance.Rd
man/plotCurves.Rd
man/plotCurves2.Rd
man/plotFVA.Rd
man/plotFluxVar.Rd
man/plotGrowthCurve.Rd
man/plotInterNum.Rd
man/plotPhenCurve.Rd
man/plotPhenNum.Rd
man/plotReaActivity.Rd
man/plotShadowCost.Rd
man/plotSpecActivity.Rd
man/plotSubCurve.Rd
man/plotSubDist.Rd
man/plotSubDist2.Rd
man/plotSubUsage.Rd
man/plotSubVar.Rd
man/plotTotFlux.Rd
man/readMATmod.Rd
man/redEval.Rd
man/reset_screen.Rd
man/rmSubs.Rd
man/selPheno.Rd
man/setKinetics.Rd
man/sihumi_test.Rd
man/simBac.Rd
man/simBac_par.Rd
man/simEnv.Rd
man/simEnv_par.Rd
man/simHum.Rd
man/statPheno.Rd
man/stirEnv.Rd
man/unit_conversion.Rd
man/usd.Rd
model/Bcoli_iAF1260.RData
model/Bs_iYO844_flux1.xml
model/Bsub_minimal_medium.xlsx
model/Bsub_model.RData
model/ecoli_iJO1366.RData
model/iSMUL-20150520-smul33.xml
model/iSMUL-20150609-smul33.xml
model/modelPOA.xml
model/modelPOA_new.xml
model/poa_minimal_medium.csv
model/poa_model.RData
model/poa_model_new.RData
model/smul_model.RData
src/RcppExports.cpp
src/addBac.cpp
src/diff.cpp
src/duplicate.cpp
src/move.cpp
vignettes/BacArena-Introduction.Rmd
vignettes/BacArena-Introduction.pdf
