plotPhenCurve: Plot growth curve for several simulations
In euba/BacArena: Modeling Framework for Cellular Communities in their Environments

plotPhenCurve

R Documentation

Plot growth curve for several simulations

Description

The function plotPhenCurve takes a list of simulations and plots the time course of species with standard deviation.

Usage

plotPhenCurve(
  simlist,
  subs,
  phens = NULL,
  time = c(NULL, NULL),
  cluster = TRUE,
  inAll = TRUE,
  col = colpal3,
  with_gc = FALSE,
  return_dat = FALSE
)

Arguments

`simlist`	A list of simulations (eval objects).
`subs`	A vector of substance names that are used for phenotype clustering.
`phens`	If phencurve is given then phens specifies the phenotypes which sould be plotted again.
`time`	Vector with two entries defining start and end time
`cluster`	True if phenotypes should be clustered/condensed.
`inAll`	True if only phenotypes which occur in all replicates should be considered
`col`	Vector with color that should be used
`with_gc`	True if growth curve of organisms should be included
`return_dat`	Should data be returned? (default false)