getSublb: Function for calculated the substrate concentration for every...

In euba/BacArena: Modeling Framework for Cellular Communities in their Environments

Function for calculated the substrate concentration for every organism

Description

The generic function getSublb calculates the substrate concentration for every individual in the environment based on their x and y position.

Usage

getSublb(object)

## S4 method for signature 'Arena'
getSublb(object)

Arguments

object

An object of class Arena.

Value

Returns the substrate concentration for every individual in the environment with substrates as well as x and y positions as columns and rows for each organism.

See Also

Arena-class

Examples

data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
           minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
arena <- addSubs(arena,40) #add all possible substances
sublb <- getSublb(arena)

euba/BacArena documentation built on March 27, 2024, 2:33 p.m.