plotAbundance: Plot abundances of species

In euba/BacArena: Modeling Framework for Cellular Communities in their Environments

Plot abundances of species

Description

The function plotAbundance takes a list of simulations and return a boxplot with species abundances

Usage

plotAbundance(
  simlist,
  time = c(NULL, NULL),
  col = colpal3,
  return_dat = F,
  use_biomass = F
)

Arguments

simlist	A list of simulations (eval objects).
time	A vector with start and end time to be considered (default: total time)
col	Vector with color that should be used
return_dat	Should plain text mean abundances be returned? (default false)
use_biomass	If enabled then biomass is used instead of cell number

euba/BacArena documentation built on March 27, 2024, 2:33 p.m.