Man pages for fredysiegrist/statanacoseq
Statistical Analyses of Codon Usage in Custom Genome Sequences
| aa_ac | Aminoacids and Anticodons |
| anticodoncount | Calculate Global Anticodon Usage |
| areopts | Optimality Decision for Codons of Custom Genome |
| checkCDS | Checks Integrity of CDS Sequence |
| CodonProb | Codon Probability table |
| CodonProbabilities | Codon Probabilities |
| CodonUsage | Table for Codon Usage and Optimality of Codons |
| ComputeCAI | Codon Adaptation Index |
| ComputeCAIVector | Codon Adaptation Index Vector |
| ComputeCarboneRA | Compute Carbone Relative Adaptiveness |
| ComputeCBI | Codon Bias Index |
| ComputeFop | Frequency of Optimal Codons |
| ComputeGC12syn | GC content 1st and 2nd position of synonymous codons |
| ComputeGC3syn | GC content 3rd position of synonymous codons |
| ComputeNEC | Effective number of codons |
| countcodonfreq | Count Codon Frequency |
| Entries | Entries |
| FindHighlyExpressedGenes | Find Highly Expressed Genes |
| GtRNAdb2species | Viruses, Eukaryota, Archaea, Bacteria Species Names on... |
| movingAverage | Calculating a Moving Average |
| mylist | My List of Nucleotide-Sequences and Aminoacid-Sequences |
| NucleotideContent | Nucleotide Content |
| plotOCU | Plot of Optimality Score for Codons in a Single Protein |
| readfasta | Processed tRNA Containing Fasta File Headers to Count... |
| readintronic | Read tRNA Intronic Gene Count Statistics |
| readstats | Read tRNA Gene Count Statistics |
| readtRNAout | Read tRNA Gene Count Statistics |
| RelativeAdaptiveness | Compute Relative Adaptiveness |
| reversecomplement | Reverse Complement Anticodon |
| RSCU | Relative Synonymous Codon Usage |
| ScaledChiSquare | Scaled Chi-Square |
| searchfafile | Search and Return a Fasta File Name from Partial Name |
| SetupRA | Relative Synonymous Codon Usage |
| SilentSiteComposition | Base Composition at Silent Sites |
| Tef | Optimal Codon Table for Eragostis tef Decided on tRNAscan-SE... |
| veab | Viruses, Eukaryota, Archaea, Bacteria Species File Names on... |
| veabfa | Viruses, Eukaryota, Archaea, Bacteria Species Fasta File... |
