mylist: My List of Nucleotide-Sequences and Aminoacid-Sequences
In fredysiegrist/statanacoseq: Statistical Analyses of Codon Usage in Custom Genome Sequences

Description Usage Arguments Details Value Author(s) See Also Examples

mylist Read-in of Nucleotide- and Protein-Sequences from Fasta Files of Custom Genome (eg Eragostis tef)

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mylist(RNAfile = system.file("extdata", "Etef.sample.transcript.fasta",
  package = "statanacoseq"), AAfile = system.file("extdata",
  "Etef.sample.protein.fasta", package = "statanacoseq"), whatout = 0)

`RNAfile`	Directory and File name pointing to fasta file for transcripts
`AAfile`	Directory and File name pointing to fasta file for corresponding proteins
`whatout`	Define the type of output; Default 0 means a list of mRNA and protein sequeces; with 1 the function returns only the list of RNA sequences and wiht 2 it returns the proein sequences

Generate a list of myseq and myaa sequences from local fasta files for codon usage analysis. As default some transcripts and corresponding protein sequences from teff are loaded from the external data directory of the package installation.

List of sequence list for nucleotide and aminoacid sequences

Siegrist, F. and Cannarozzi, G. M. gina@cannarozzi.com

seqinr statanacoseq