readtRNAout: Read tRNA Gene Count Statistics
In fredysiegrist/statanacoseq: Statistical Analyses of Codon Usage in Custom Genome Sequences
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
readtRNAout read-in anticodon count from tRNAscan-2.0 output file from online web tool
Usage
1
2
readtRNAout(file = system.file("extdata", "seq30469.out", package =
"statanacoseq"))
Arguments
file
seq.out file from tRNAscan-SE 2.0
Details
Puts gene count into a table according to anticodon sequence on tRNA.
This functions works on a tRNA-scan output reanalyzed by tRNAscan-SE 2.0 online tool
to behave similarly to the data available on GtRNAdb2.
Value
tRNA gene count Table
Author(s)
Siegrist, F. and Cannarozzi, G. M. gina@cannarozzi.com
See Also
seqinr statanacoseq http://trna.ucsc.edu/tRNAscan-SE/
Examples
1
fredysiegrist/statanacoseq documentation built on May 16, 2019, 2:44 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
readtRNAout read-in anticodon count from tRNAscan-2.0 output file from online web tool
Usage
1 2 | readtRNAout(file = system.file("extdata", "seq30469.out", package =
"statanacoseq"))
|
Arguments
file |
seq.out file from tRNAscan-SE 2.0 |
Details
Puts gene count into a table according to anticodon sequence on tRNA. This functions works on a tRNA-scan output reanalyzed by tRNAscan-SE 2.0 online tool to behave similarly to the data available on GtRNAdb2.
Value
tRNA gene count Table
Author(s)
Siegrist, F. and Cannarozzi, G. M. gina@cannarozzi.com
See Also
seqinr statanacoseq http://trna.ucsc.edu/tRNAscan-SE/
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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