plotOCU: Plot of Optimality Score for Codons in a Single Protein

Description Usage Arguments Details Value Author(s) See Also Examples

Description

plotOCU Plots the Optimality Score for Codon in a Protein based on tRNA-Gene Abundancy in a Custom Genome (eg Eragostis tef)

Usage

1
plotOCU(entry = 3, isfreq = FALSE)

Arguments

entry

Index number in SeqFastadna list myaa

isfreq

frequencies are used instead of boolean of optimaity

Details

Here a plot for the optimality of the used codons of a protein is plotted for its position in the protein sequence. Two mooving averages are overlayed for better visuality. In development stage!

Value

void

Author(s)

Siegrist, F. and Cannarozzi, G. M. gina@cannarozzi.com

See Also

movingAverage statanacoseq

Examples

1
for (n in 1:length(mylist()[[2]]) try(plotOCU(n, TRUE))

fredysiegrist/statanacoseq documentation built on May 16, 2019, 2:44 p.m.