Description Usage Arguments Details Value Author(s) See Also Examples
checkCDS
Checks that the character number in the cds is in codons (modulo 3 = zero)
1 |
cds |
Sequence to be checked # may be implemented as list List of Coding Sequences as read.fasta input |
ignore |
If TRUE returns TRUE even in case of biological violations (as for stop codons in sequence). |
Based on early codon usage mesures proposed by Ikemura 1981. Original implementation from Alexander Roth 2005-2007, first of several indices for codon usage.
TRUE if all checks are passed with or without warnings, FALSE if an violation is found
Siegrist, F. and Cannarozzi, G. M. gina@cannarozzi.com
seqinr
statanacoseq
ComputeFop
1 | checkCDS(c2s('ATGTGGTACTCCGACTACGGAGGATAA'))
|
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