SetupRA: Relative Synonymous Codon Usage
In fredysiegrist/statanacoseq: Statistical Analyses of Codon Usage in Custom Genome Sequences
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
SetupRA creates a table of relative adaptiveness for yeast or based on carbon RA
Usage
1
SetupRA(s = "yeast")
Arguments
s
Species and subsettings, maybe one of
c('yeast', 'yeast2perc', 'yeast1perc', 'yeast05perc', 'yeasttop24protexpr', 'yeasttop24mrnaexpr')
or 'carbone' for computing carbone RA with standard values.
Details
Generation of manually set tables.
Value
Numerical vector with relative adaptiveness for the 64 codons
Author(s)
Roth, A.; Friberg, M.; Siegrist, F. and Cannarozzi, G. M. gina@cannarozzi.com
See Also
Examples
1
SetupRA('yeast2perc')
fredysiegrist/statanacoseq documentation built on May 16, 2019, 2:44 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
SetupRA creates a table of relative adaptiveness for yeast or based on carbon RA
Usage
1 | SetupRA(s = "yeast")
|
Arguments
s |
Species and subsettings, maybe one of c('yeast', 'yeast2perc', 'yeast1perc', 'yeast05perc', 'yeasttop24protexpr', 'yeasttop24mrnaexpr') or 'carbone' for computing carbone RA with standard values. |
Details
Generation of manually set tables.
Value
Numerical vector with relative adaptiveness for the 64 codons
Author(s)
Roth, A.; Friberg, M.; Siegrist, F. and Cannarozzi, G. M. gina@cannarozzi.com
See Also
Examples
1 | SetupRA('yeast2perc')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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