CodonUsage: Table for Codon Usage and Optimality of Codons
In fredysiegrist/statanacoseq: Statistical Analyses of Codon Usage in Custom Genome Sequences
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
CodonUsage calculates ratio of optimal codons used to the sum of synonymous codons
Usage
1
CodonUsage(cdslist = mylist())
Arguments
cdslist
List of coding sequences in reading frame (eg. of full genome), handles also DNA string sequences.
Details
Creates a count table to decide on optimality of codons based on the usage of the imput DNA sequences.
Value
data frame with codon usage count Table with statistics for optimality based on occurence
Author(s)
Siegrist, F. and Cannarozzi, G. M. gina@cannarozzi.com
See Also
Examples
1
2
CodonUsage('ATGTGGTACTCCGACTACGGAGGATAA')
CodonUsage(mylist(whatout=1))
fredysiegrist/statanacoseq documentation built on May 16, 2019, 2:44 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
CodonUsage calculates ratio of optimal codons used to the sum of synonymous codons
Usage
1 | CodonUsage(cdslist = mylist())
|
Arguments
cdslist |
List of coding sequences in reading frame (eg. of full genome), handles also DNA string sequences. |
Details
Creates a count table to decide on optimality of codons based on the usage of the imput DNA sequences.
Value
data frame with codon usage count Table with statistics for optimality based on occurence
Author(s)
Siegrist, F. and Cannarozzi, G. M. gina@cannarozzi.com
See Also
Examples
1 2 | CodonUsage('ATGTGGTACTCCGACTACGGAGGATAA')
CodonUsage(mylist(whatout=1))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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