areopts: Optimality Decision for Codons of Custom Genome

In fredysiegrist/statanacoseq: Statistical Analyses of Codon Usage in Custom Genome Sequences

Description

areopts Calculates an Optimality Score for Codon in a Protein-Transcript Pair based on tRNA-Gene Abundancy in a Custom Genome (eg Eragostis tef)

Usage

areopts(entry = 3, opt = TRUE)

Arguments

entry	Index number in SeqFastadna list myaa
opt	If boolean and not fraction of tRNA genes to optimal isocode is used
areopt	Vector of anticodon optimality 0>=areopt<=1

Details

This function should count the codon frequency in a genome based on a set of verified and matched transcript and protein fasta files. This is a roxygen2 created helping file.

Value

Boolean or numerical vector with Optimality decision or score

Author(s)

Siegrist, F. and Cannarozzi, G. M. [e-mail]

See Also

seqinr statanacoseq

Examples

areopts(entry=1, opt=TRUE)

fredysiegrist/statanacoseq documentation built on May 16, 2019, 2:44 p.m.