Files in fredysiegrist/statanacoseq
Statistical Analyses of Codon Usage in Custom Genome Sequences
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/CodonProb.R
R/CodonProbabilities.R
R/CodonUsage.R
R/ComputeCAI.R
R/ComputeCAIVector.R
R/ComputeCBI.R
R/ComputeCarboneRA.R
R/ComputeFop.R
R/ComputeGC12syn.R
R/ComputeGC3syn.R
R/ComputeNEC.R
R/Entries.R
R/FindHighlyExpressedGenes.R
R/NucleotideContent.R
R/RSCU.R
R/RelativeAdaptiveness.R
R/ScaledChiSquare.R
R/SetupRA.R
R/SilentSiteComposition.R
R/anticodoncount.R
R/areopts.R
R/checkCDS.R
R/countcodonfreq.R
R/data.R
R/movingAverage.R
R/mylist.R
R/plotOCU.R
R/readfasta.R
R/readintronic.R
R/readstats.R
R/readtRNAout.R
R/reversecomplement.R
R/searchfafile.R
R/statanacoseq-package.R
R/statanacoseq.R
Rplots.pdf
data-raw/GtRNAdb2species.R
data-raw/aa_ac.R
data-raw/reps.R
data-raw/veab.R
data-raw/veabfa.R
data/GtRNAdb2species.RData
data/Tef.RData
data/aa_ac.RData
data/reps.RData
data/veab.RData
data/veabfa.RData
demo/00index
demo/Fop.R
demo/NEC.R
demo/plotGC.R
demo/plotOCU.R
inst/CITATION
inst/extdata/Etef.sample.protein.fasta
inst/extdata/Etef.sample.transcript.fasta
inst/extdata/seq30469.out
man/CodonProb.Rd
man/CodonProbabilities.Rd
man/CodonUsage.Rd
man/ComputeCAI.Rd
man/ComputeCAIVector.Rd
man/ComputeCBI.Rd
man/ComputeCarboneRA.Rd
man/ComputeFop.Rd
man/ComputeGC12syn.Rd
man/ComputeGC3syn.Rd
man/ComputeNEC.Rd
man/Entries.Rd
man/FindHighlyExpressedGenes.Rd
man/GtRNAdb2species.Rd
man/NucleotideContent.Rd
man/RSCU.Rd
man/RelativeAdaptiveness.Rd
man/ScaledChiSquare.Rd
man/SetupRA.Rd
man/SilentSiteComposition.Rd
man/Tef.Rd
man/aa_ac.Rd
man/anticodoncount.Rd
man/areopts.Rd
man/checkCDS.Rd
man/countcodonfreq.Rd
man/movingAverage.Rd
man/mylist.Rd
man/plotOCU.Rd
man/readfasta.Rd
man/readintronic.Rd
man/readstats.Rd
man/readtRNAout.Rd
man/reversecomplement.Rd
man/searchfafile.Rd
man/statsanacoseq-package.r
man/veab.Rd
man/veabfa.Rd
statanacoseq.Rproj
tests/1.R
tests/run_tests.R
tests/testthat.R
tests/testthat/test_Fop.R
tests/testthat/test_NEC.R
tests/testthat/test_NucleotideContent.R
tests/testthat/test_checkCDNA.R
tests/testthat/test_species.R
