readfasta: Processed tRNA Containing Fasta File Headers to Count...

In fredysiegrist/statanacoseq: Statistical Analyses of Codon Usage in Custom Genome Sequences

Description

readfasta processes fasta sequence headers from tRNA gene sequences of complete genomes and compares anticodon usage in the gene set.

Usage

readfasta(fileno = 1, chunksize = 1, verbose = TRUE)

Arguments

verbose	Wheter to show the aminoacid, anticodon and tRNA Model Score from fasta entry header
fam	Taxonomy kingdom defining the folder on gtrnadb homepage
spec	Species identifier as pointer to .fa filename

Details

Import helper function to manage automatical downloading of fasta files.

Value

tRNA gene count Table with statistics

Author(s)

Siegrist, F. and Cannarozzi, G. M. [e-mail]

See Also

seqinr statanacoseq http://gtrnadb.ucsc.edu/GtRNAdb2/ readstats

Examples

readfasta(131)

fredysiegrist/statanacoseq documentation built on May 16, 2019, 2:44 p.m.