API for haizi-zh/hictools
Home-made handy tools for Hi-C
| Global functions | |
|---|---|
| `hic_genome<-` | Source code |
| `hic_norm<-` | Source code |
| `hic_sample<-` | Source code |
| `hic_type<-` | Source code |
| allowed_resol | Man page Source code |
| comp_correlation | Man page Source code |
| compartment_fanc | Man page Source code |
| compartment_ht | Man page Source code |
| compartment_juicer_file | Man page Source code |
| concat_hic | Man page Source code |
| convert_hic_matrix | Man page |
| decay | Man page Source code |
| gc.GRCh37.1000kbp | Man page |
| gc.GRCh37.100kbp | Man page |
| gc.GRCh37.2500kbp | Man page |
| gc.GRCh37.250kbp | Man page |
| gc.GRCh37.500kbp | Man page |
| gc.GRCh38.1000kbp | Man page |
| gc.GRCh38.100kbp | Man page |
| gc.GRCh38.2500kbp | Man page |
| gc.GRCh38.250kbp | Man page |
| gc.GRCh38.500kbp | Man page |
| gencode.v30.b37.gene_density.1000kbp | Man page |
| gencode.v30.b37.gene_density.100kbp | Man page |
| gencode.v30.b37.gene_density.250kbp | Man page |
| gencode.v30.b37.gene_density.500kbp | Man page |
| gencode.v30.b37.gene_density.50kbp | Man page |
| get_compartment | Man page Source code |
| get_compartment.character | Man page Source code |
| get_compartment.ht_table | Man page Source code |
| get_juicer_genome | Source code |
| get_juicer_tools | Man page Source code |
| get_possible_dist | Source code |
| hic_genome | Man page Source code |
| hic_genome<- | Man page |
| hic_norm | Man page Source code |
| hic_norm<- | Man page |
| hic_resol | Man page Source code |
| hic_sample | Man page Source code |
| hic_sample<- | Man page |
| hic_type | Man page Source code |
| hic_type<- | Man page |
| hicexplorer_pca | Man page Source code |
| ht_table | Man page Source code |
| is_valid_resol | Man page Source code |
| is_wholenumber | Man page |
| load_hic | Man page |
| load_hic_cool | Man page |
| load_hic_genbed | Man page |
| load_juicer_hic | Man page Source code |
| new_ht_table | Source code |
| normalize_hic | Man page Source code |
| oe_ht | Source code |
| oe_juicer | Man page Source code |
| orient_compartment | Man page Source code |
| pearson_ht | Man page Source code |
| pearson_juicer | Man page Source code |
| plot_compartment | Man page Source code |
| plot_compartment_scatter | Man page Source code |
| plot_hic_matrix | Man page Source code |
| print.ht_table | Source code |
| strat_dist | Man page Source code |
| validate_ht_table | Source code |
| write_cool | Man page |
| write_hic | Man page |
| write_hic_bedtorch | Man page |
| write_juicer_hic | Man page |
