hicexplorer_pca: Run hicPCA
In haizi-zh/hictools: Home-made handy tools for Hi-C
hicexplorer_pca R Documentation
Run hicPCA
Description
Run hicPCA and return the PCs, the O/E matrix and the Pearson correlation matrix
Usage
hicexplorer_pca(
hic_matrix,
juicertools,
executable = "hicPCA",
executable_convert = "hicConvertFormat",
java = "java",
npc = 2,
chrom = NULL,
method = "lieberman"
)
Arguments
hic_matrix
A Hi-C matrix object
haizi-zh/hictools documentation built on June 29, 2022, 4:32 a.m.
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| hicexplorer_pca | R Documentation |
Run hicPCA
Description
Run hicPCA and return the PCs, the O/E matrix and the Pearson correlation matrix
Usage
hicexplorer_pca( hic_matrix, juicertools, executable = "hicPCA", executable_convert = "hicConvertFormat", java = "java", npc = 2, chrom = NULL, method = "lieberman" )
Arguments
hic_matrix |
A Hi-C matrix object |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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