orient_compartment: Orient the compartment score signs according to 'reference'

In haizi-zh/hictools: Home-made handy tools for Hi-C

Orient the compartment score signs according to reference

Description

Orient the compartment score signs according to reference

Usage

orient_compartment(compartment, reference, score_cols = c("score"))

Arguments

compartment	A GRanges object for compartment scores.
reference	A GRanges for the reference compartment track.
score_cols	A character vector indicating which columns are candidates for compartment scores. For example, c("PC1", "PC2") means from PC1 and PC2, picking the one most likely to be associated with A/B compartments, and orient it if necessary.

Value

The compartment. The signs of compartment scores may have been flipped based on reference.

haizi-zh/hictools documentation built on June 29, 2022, 4:32 a.m.