plot_hic_matrix: Visualize Hi-C data
In haizi-zh/hictools: Home-made handy tools for Hi-C
View source: R/visualization.R
plot_hic_matrix R Documentation
Visualize Hi-C data
Description
Show a heatmap of the Hi-C data
Usage
plot_hic_matrix(
hic,
chrom = NULL,
control_hic = NULL,
scale_factor = c(1, 1),
norm = c(0, 1),
transform = c("log10", "linear"),
missing_value = NULL,
n.breaks = NULL,
color_palette = "viridis",
gamma = "auto",
tile_outline = NULL,
verbose = FALSE
)
Arguments
chrom
Indicate which chromosome to process. If NULL, hic
should contain only one chromosome, which will be used in the
visualization.
haizi-zh/hictools documentation built on June 29, 2022, 4:32 a.m.
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View source: R/visualization.R
| plot_hic_matrix | R Documentation |
Visualize Hi-C data
Description
Show a heatmap of the Hi-C data
Usage
plot_hic_matrix(
hic,
chrom = NULL,
control_hic = NULL,
scale_factor = c(1, 1),
norm = c(0, 1),
transform = c("log10", "linear"),
missing_value = NULL,
n.breaks = NULL,
color_palette = "viridis",
gamma = "auto",
tile_outline = NULL,
verbose = FALSE
)
Arguments
chrom |
Indicate which chromosome to process. If |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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