compartment_fanc: Get compartment using FANC, from an existing .hic file
In haizi-zh/hictools: Home-made handy tools for Hi-C

compartment_fanc

R Documentation

Get compartment using FANC, from an existing .hic file

Description

Get compartment using FANC, from an existing .hic file

Usage

compartment_fanc(
  hic_file,
  norm = c("NONE", "VC", "VC_SQRT", "KR", "SCALE"),
  resol,
  ev = 1:2,
  genome = NULL,
  ab_file = NULL,
  keep_ab = !is_null(ab_file)
)

Arguments

`ev`	an integer vector specifying which eigenvectors to calculate
`ab_file`	path to a pre-calculated AB matrix file
`keep_ab`	if `TRUE`, keep the AB matrix file. This requires `ab_file = NULL`