ht_table: Construct an 'ht_table' object, which represents a Hi-C-like...

In haizi-zh/hictools: Home-made handy tools for Hi-C

Construct an ht_table object, which represents a Hi-C-like dataset.

Description

Construct an ht_table object, which represents a Hi-C-like dataset.

Usage

ht_table(
  dt,
  sample = NULL,
  resol = NULL,
  type = NULL,
  norm = NULL,
  genome = NULL,
  copy_from = NULL
)

Arguments

dt	A data.frame input.
resol	A positive integer for the resolution (or bin size).
type	observed for raw counts, oe for "observation/expected" value, and cofrag for cofragmentation contact score.
norm	Indicate whether any normalization method has been applied.
genome	A character scalar specifying the genome name. For example: hg37-1kg. Can be NULL if no genome is specified.
copy_from	Copy attributes from an existing ht_table object

haizi-zh/hictools documentation built on June 29, 2022, 4:32 a.m.