write_juicer_hic: Dump a Hi-C object as .hic format
In haizi-zh/hictools: Home-made handy tools for Hi-C

write_juicer_hic

R Documentation

Dump a Hi-C object as .hic format

Description

This function invokes Juicer tools for the dumping

Usage

write_juicer_hic(
  hic_matrix,
  file_path,
  juicertools = get_juicer_tools(),
  java = "java",
  norm = c("NONE", "VC", "VC_SQRT", "KR", "SCALE")
)

Arguments

`hic_matrix`	A Hi-C object
`file_path`	Path to the output .hic file
`java`	Path to JVM. Default is `java`
`norm`	Calculate specific normalizations. Default is VC,VC_SQRT,KR,SCALE
`ref_genome`	Reference genome `hic_matrix` is using. Default is `hg19`