compartment_juicer_file: Compute compartment scores using Juicer tools, from an...
In haizi-zh/hictools: Home-made handy tools for Hi-C
compartment_juicer_file R Documentation
Compute compartment scores using Juicer tools, from an existing .hic file
Description
Compute compartment scores using Juicer tools, from an existing .hic file
Usage
compartment_juicer_file(
hic_file,
juicertools = get_juicer_tools(),
java = "java",
norm = c("NONE", "VC", "VC_SQRT", "KR", "SCALE"),
chrom = NULL,
resol = NULL,
genome = NULL,
bpparam = BiocParallel::bpparam("SerialParam")
)
Arguments
bpparam
BiocParallelParam for parallel operation
haizi-zh/hictools documentation built on June 29, 2022, 4:32 a.m.
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| compartment_juicer_file | R Documentation |
Compute compartment scores using Juicer tools, from an existing .hic file
Description
Compute compartment scores using Juicer tools, from an existing .hic file
Usage
compartment_juicer_file(
hic_file,
juicertools = get_juicer_tools(),
java = "java",
norm = c("NONE", "VC", "VC_SQRT", "KR", "SCALE"),
chrom = NULL,
resol = NULL,
genome = NULL,
bpparam = BiocParallel::bpparam("SerialParam")
)
Arguments
bpparam |
BiocParallelParam for parallel operation |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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