load_hic_genbed: Load Hi-C data in BED format

In haizi-zh/hictools: Home-made handy tools for Hi-C

Load Hi-C data in BED format

Description

Load Hi-C data in BED format

Usage

load_hic_genbed(
  file_path,
  type,
  norm,
  genome,
  sample = NULL,
  resol = NULL,
  chrom = NULL,
  score_col = 7L,
  bootstrap = 1L
)

Arguments

resol	An integer for the resolution. If NULL, the resolution will be guessed from the Hi-C data.
score_col	Specify which column represents cofrag scores. Default is 7 (the 7th column).
bootstrap	If multiple bootstrap records exist, only return results for specified bootstrap iterations. If NULL, results for all bootstrap iterations will be retunred.

haizi-zh/hictools documentation built on June 29, 2022, 4:32 a.m.