comp_correlation: Calculate correlation coefficients between two compartment...

In haizi-zh/hictools: Home-made handy tools for Hi-C

Calculate correlation coefficients between two compartment tracks

Description

Calculate correlation coefficients between two compartment tracks

Usage

comp_correlation(
  x,
  y,
  score_x = 1,
  score_y = 1,
  method = c("pearson", "spearman", "kendall"),
  overall = FALSE
)

Arguments

x	Compartment scores.
y	Compartment scores.
score_x	name of the score column in x
score_y	name of the score column in y
method	Type of correlation scores. Must be one of "pearson", "spearman", and "kendall".
overall	if FALSE, calculate correlation scores for each chromosome separately

Value

A data frame for correlation.

haizi-zh/hictools documentation built on June 29, 2022, 4:32 a.m.