load_juicer_hic: Load Hi-C dataset from a .hic file
In haizi-zh/hictools: Home-made handy tools for Hi-C
load_juicer_hic R Documentation
Load Hi-C dataset from a .hic file
Description
This function invokes Juicer tools for the dumping
Usage
load_juicer_hic(
file_path,
resol,
type,
norm,
genome,
sample = NULL,
chrom = NULL
)
Arguments
file_path
Path to the .hic file
resol
Resolution in base pair (BP)
norm
See the manual of Juicer tools.
chrom
A character vector to indicate what chromosomes to load
matrix
Should be observed or oe
Value
A Hi-C object
haizi-zh/hictools documentation built on June 29, 2022, 4:32 a.m.
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| load_juicer_hic | R Documentation |
Load Hi-C dataset from a .hic file
Description
This function invokes Juicer tools for the dumping
Usage
load_juicer_hic( file_path, resol, type, norm, genome, sample = NULL, chrom = NULL )
Arguments
file_path |
Path to the .hic file |
resol |
Resolution in base pair (BP) |
norm |
See the manual of Juicer tools. |
chrom |
A character vector to indicate what chromosomes to load |
matrix |
Should be |
Value
A Hi-C object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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