compartment_ht: Compute compartment scores using hictools's own...
In haizi-zh/hictools: Home-made handy tools for Hi-C
compartment_ht R Documentation
Compute compartment scores using hictools's own implementation of compartment analysis, as opposed to juicer
Description
Compute compartment scores using hictools's own implementation of compartment analysis, as opposed to juicer
Usage
compartment_ht(
hic_matrix,
method = c("lieberman", "obs_exp", "nonzero", "average"),
oe = c("ht", "as-is"),
chrom = NULL,
npc = 2L
)
Arguments
npc
A positive integer indicating how many principal components to keep.
haizi-zh/hictools documentation built on June 29, 2022, 4:32 a.m.
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| compartment_ht | R Documentation |
Compute compartment scores using hictools's own implementation of compartment analysis, as opposed to juicer
Description
Compute compartment scores using hictools's own implementation of compartment analysis, as opposed to juicer
Usage
compartment_ht(
hic_matrix,
method = c("lieberman", "obs_exp", "nonzero", "average"),
oe = c("ht", "as-is"),
chrom = NULL,
npc = 2L
)
Arguments
npc |
A positive integer indicating how many principal components to keep. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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