Files in haizi-zh/hictools
Home-made handy tools for Hi-C
.Rbuildignore
.gitignore
CHANGELOG.md
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/analysis.R
R/data.R
R/ht_table.R
R/io.R
R/main.R
R/misc.R
R/sysdata.rda
R/utils.R
R/visualization.R
data-raw/chrom_sizes.R
data-raw/example.bed
data-raw/example.cool
data-raw/example.hic
data-raw/example.short
data-raw/example.txt
data-raw/foo.R
data-raw/gc.R
data-raw/gencode.v30.b37.gene_density.R
data-raw/wbc.rep1.compartment.hs37-1kg.R
data/chrom_sizes.hs37-1kg.rda
data/gc.GRCh37.1000kbp.rda
data/gc.GRCh37.100kbp.rda
data/gc.GRCh37.2500kbp.rda
data/gc.GRCh37.250kbp.rda
data/gc.GRCh37.500kbp.rda
data/gc.GRCh37.50kbp.rda
data/gc.GRCh38.1000kbp.rda
data/gc.GRCh38.100kbp.rda
data/gc.GRCh38.2500kbp.rda
data/gc.GRCh38.250kbp.rda
data/gc.GRCh38.500kbp.rda
data/gc.GRCh38.50kbp.rda
data/gencode.v30.b37.gene_density.1000kbp.rda
data/gencode.v30.b37.gene_density.100kbp.rda
data/gencode.v30.b37.gene_density.2500kbp.rda
data/gencode.v30.b37.gene_density.250kbp.rda
data/gencode.v30.b37.gene_density.5000kbp.rda
data/gencode.v30.b37.gene_density.500kbp.rda
data/gencode.v30.b37.gene_density.50kbp.rda
data/wbc.rep1.compartment.hs37-1kg.KR.1000kbp.rda
data/wbc.rep1.compartment.hs37-1kg.KR.2500kbp.rda
data/wbc.rep1.compartment.hs37-1kg.KR.500kbp.rda
data/wbc.rep1.compartment.hs37-1kg.NONE.1000kbp.rda
data/wbc.rep1.compartment.hs37-1kg.NONE.2500kbp.rda
data/wbc.rep1.compartment.hs37-1kg.NONE.500kbp.rda
data/wbc.rep1.compartment.hs37-1kg.VC.1000kbp.rda
data/wbc.rep1.compartment.hs37-1kg.VC.2500kbp.rda
data/wbc.rep1.compartment.hs37-1kg.VC.500kbp.rda
data/wbc.rep1.compartment.hs37-1kg.VC_SQRT.1000kbp.rda
data/wbc.rep1.compartment.hs37-1kg.VC_SQRT.2500kbp.rda
data/wbc.rep1.compartment.hs37-1kg.VC_SQRT.500kbp.rda
hictools.Rproj
inst/extdata/juicer_tools_1.22.01.jar
inst/extdata/juicer_tools_2.13.07.51.jar
man/allowed_resol.Rd
man/comp_correlation.Rd
man/compartment_fanc.Rd
man/compartment_ht.Rd
man/compartment_juicer_file.Rd
man/concat_hic.Rd
man/convert_hic_matrix.Rd
man/decay.Rd
man/gc.GRCh37.100kbp.Rd
man/gencode.v30.b37.gene_density.50kbp.Rd
man/get_compartment.Rd
man/get_compartment.character.Rd
man/get_compartment.ht_table.Rd
man/get_juicer_tools.Rd
man/hic_genome-set.Rd
man/hic_genome.Rd
man/hic_norm-set.Rd
man/hic_norm.Rd
man/hic_resol.Rd
man/hic_sample-set.Rd
man/hic_sample.Rd
man/hic_type-set.Rd
man/hic_type.Rd
man/hicexplorer_pca.Rd
man/ht_table.Rd
man/is_valid_resol.Rd
man/is_wholenumber.Rd
man/load_hic.Rd
man/load_hic_cool.Rd
man/load_hic_genbed.Rd
man/load_juicer_hic.Rd
man/normalize_hic.Rd
man/oe_juicer.Rd
man/orient_compartment.Rd
man/pearson_ht.Rd
man/pearson_juicer.Rd
man/plot_compartment.Rd
man/plot_compartment_scatter.Rd
man/plot_hic_matrix.Rd
man/strat_dist.Rd
man/write_cool.Rd
man/write_hic.Rd
man/write_hic_bedtorch.Rd
man/write_juicer_hic.Rd
tests/testthat.R
tests/testthat/test-analysis.R
tests/testthat/test-io.R
