buildMSIGDB: Download database from Msigdb and prepare for enrichment...
In hurlab/RichR: Function Enrichment analysis and Network construction
buildMSIGDB R Documentation
Download database from Msigdb and prepare for enrichment analysis
Description
Download database from Msigdb and prepare for enrichment analysis
Usage
buildMSIGDB(species = "human", keytype = "SYMBOL", anntype = "GO")
Arguments
species
the species for query
keytype
the gene ID type
anntype
anntotaion type of gene set (GO,BP,CC,MF,KEGG,REACTOME,
BIOCARTA,HALLMARK)
Author(s)
Kai Guo
Examples
## Not run:
hsamsi<-buildMSIGDB(species = "human", keytype = "SYMBOL", anntype = "GO")
## End(Not run)
hurlab/RichR documentation built on Feb. 5, 2024, 8:07 p.m.
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| buildMSIGDB | R Documentation |
Download database from Msigdb and prepare for enrichment analysis
Description
Download database from Msigdb and prepare for enrichment analysis
Usage
buildMSIGDB(species = "human", keytype = "SYMBOL", anntype = "GO")
Arguments
species |
the species for query |
keytype |
the gene ID type |
anntype |
anntotaion type of gene set (GO,BP,CC,MF,KEGG,REACTOME, BIOCARTA,HALLMARK) |
Author(s)
Kai Guo
Examples
## Not run:
hsamsi<-buildMSIGDB(species = "human", keytype = "SYMBOL", anntype = "GO")
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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