ggdot | R Documentation |
ggdot
ggdot(
object,
top = 50,
pvalue = 0.05,
order = FALSE,
low = "lightpink",
high = "red",
alpha = 0.7,
font.x = "bold",
font.y = "bold",
fontsize.x = 10,
fontsize.y = 10,
short = FALSE,
padj = NULL,
usePadj = TRUE,
orderp = FALSE,
filename = NULL,
width = 10,
height = 8,
...
)
object |
enrichment result or data.frame |
top |
number of terms you want to display, |
pvalue |
cutoff value of pvalue (if padj set as NULL) |
order |
order by Term or richFactor |
low |
low color |
high |
high color |
alpha |
transparency alpha |
font.x |
font of x axis |
fontsize.x |
fontsize of x axis |
fontsize.y |
fontsize of y axis |
short |
automatic short name or not |
usePadj |
use p adjust value as color or not (should use with padj) |
orderp |
order by p value(adjusted p value) |
width |
figure width |
height |
figure height |
font |
y font of y axis |
font.size |
font size for xlim or ylim |
ggplot2 object
Kai Guo
## Not run:
hsako <- buildAnnot(species="human",keytype="SYMBOL",anntype = "KEGG")
gene <- sample(unique(hsako$GeneID),1000)
res <- richKEGG(gene,kodata = hsako)
ggdot(res)
## End(Not run)
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