msigdbr: Download database from Msigdb and prepare for enrichment...

In hurlab/RichR: Function Enrichment analysis and Network construction

Download database from Msigdb and prepare for enrichment analysis

Description

Download database from Msigdb and prepare for enrichment analysis

Usage

buildMSIGDB(
  species = "human",
  keytype = "SYMBOL",
  anntype = "GO",
  category = NULL
)

Arguments

species	the species for query
keytype	the gene ID type
anntype	gene set anntype (HALLMARK,GO,BP,CC,MF,KEGG,REACTOME,BIOCARTA)

Author(s)

Kai Guo

Examples

## Not run: 
hsamsi<-buildMSIGDB(species="human",keytype="SYMBOL",anntype="GO")

## End(Not run)

hurlab/RichR documentation built on Feb. 5, 2024, 8:07 p.m.