compareResult: compare enrichment results across different samples
In hurlab/RichR: Function Enrichment analysis and Network construction

compareResult

R Documentation

compare enrichment results across different samples

Description

compare enrichment results across different samples

Usage

compareResult(x, pvalue = 0.05, padj = NULL, include.all = FALSE)

Arguments

`x`	list of richResults
`pvalue`	cutoff pvalue
`padj`	cutoff p adjust value
`include.all`	include all richResults even empty

Author(s)

Kai Guo

Examples

## Not run: 
hsako <- buildAnnot(species="human",keytype="SYMBOL",anntype = "KEGG")
hsago <- buildAnnot(species="human",keytype="SYMBOL",anntype = "GO")
gene1 <- sample(unique(hsako$GeneID),1000)
gene2 <- sample(unique(hsako$GeneID),1000)
resko1 <-richKEGG(gene1,kodata = hsako)
resko2 <-richKEGG(gene2,kodata = hsako)
res<-compareResult(list(S1=resko1,S2=resko2))

## End(Not run)

hurlab/RichR documentation built on Feb. 5, 2024, 8:07 p.m.