dot-kappa_cluster_internal: calculate kappa cluster

In hurlab/RichR: Function Enrichment analysis and Network construction

calculate kappa cluster

Description

calculate kappa cluster

Usage

.kappa_cluster_internal(
  x,
  gene = NULL,
  useTerm = FALSE,
  cutoff = 0.5,
  overlap = 0.5,
  minSize = 5,
  escore = 3
)

Arguments

x	richResult object
gene	(Optional).a vector of gene list
useTerm	to use the term or not (TRUE/FALSE)
cutoff	kappa score threshold for significant dispersion results
overlap	overlap between clusters
minSize	minimal number of terms in the cluster
escore	kappa enrichment score cutoff value (default: 3)

Author(s)

Kai Guo

hurlab/RichR documentation built on Feb. 5, 2024, 8:07 p.m.