comparedot: draw dotplot for multiple enrichment results

In hurlab/RichR: Function Enrichment analysis and Network construction

draw dotplot for multiple enrichment results

Description

draw dotplot for multiple enrichment results

Usage

comparedot(
  x,
  pvalue = 0.05,
  low = "lightpink",
  high = "red",
  alpha = 0.7,
  font.x = "bold",
  font.y = "bold",
  fontsize.x = 10,
  fontsize.y = 10,
  short = FALSE,
  padj = NULL,
  usePadj = TRUE,
  filename = NULL,
  width = 10,
  height = 8,
  include.all = FALSE
)

Arguments

x	dataframe of enrichment result
pvalue	cutoff value of pvalue (if padj set as NULL)
low	low color
high	high color
alpha	transparency alpha
font.x	font of x axis
font.y	font of y axis
fontsize.x	fontsize of x axis
fontsize.y	fontsize of y axis
short	automatic short name or not
padj	cutoff value of p adjust value
usePadj	use p adjust value as color or not (should use with padj)
filename	figure output name
width	figure width
height	figure height
include.all	include all richResults even empty

Author(s)

Kai Guo

Examples

## Not run: 
hsako <- buildAnnot(species="human",keytype="SYMBOL",anntype = "KEGG")
hsago <- buildAnnot(species="human",keytype="SYMBOL",anntype = "GO")
gene1 <- sample(unique(hsako$GeneID),1000)
gene2 <- sample(unique(hsako$GeneID),1000)
resko1 <-richKEGG(gene1,kodata = hsako)
resko2 <-richKEGG(gene2,kodata = hsako)
res<-compareResult(list(S1=resko1,S2=resko2))
comparedot(res,pvalue=0.05)

## End(Not run)

hurlab/RichR documentation built on Feb. 5, 2024, 8:07 p.m.