ggbar_internal | R Documentation |
barplot for Enrichment results
barplot for Enrichment result
ggbar_internal(
resultFis,
top = 50,
pvalue = 0.05,
order = FALSE,
horiz = TRUE,
low = "lightpink",
high = "red",
font.x = "bold",
font.y = "bold",
fontsize.x = 10,
fontsize.y = 10,
short = FALSE,
fontsize.text = 3,
angle = 75,
padj = NULL,
usePadj = TRUE,
orderp = FALSE,
filename = NULL,
width = 10,
height = 8
)
## S4 method for signature 'richResult'
ggbar(
object,
top = 50,
pvalue = 0.05,
padj = NULL,
order = FALSE,
usePadj = TRUE,
fontsize.x = 10,
fontsize.y = 10,
short = FALSE,
fontsize.text = 3,
angle = 75,
orderp = orderp,
filename = NULL,
width = 10,
height = 8,
horiz = TRUE,
...
)
## S4 method for signature 'data.frame'
ggbar(
object,
top = 50,
pvalue = 0.05,
padj = NULL,
order = FALSE,
usePadj = TRUE,
fontsize.x = 10,
fontsize.y = 10,
short = FALSE,
fontsize.text = 3,
angle = 75,
orderp = FALSE,
filename = NULL,
width = 10,
height = 8,
horiz = TRUE,
...
)
top |
number of terms you want to display, |
pvalue |
cutoff value of pvalue (if padj set as NULL) |
order |
order by Term or richFactor |
horiz |
horiz or not |
low |
low color |
high |
high color |
font.x |
font of x axis |
fontsize.x |
fontsize of x axis |
fontsize.y |
fontsize of y axis |
short |
automatic short name or not |
padj |
cutoff value of p adjust value |
usePadj |
use p adjust value as color or not (should use with padj) |
orderp |
order by p value(adjusted p value) |
filename |
figure output name |
width |
figure width |
height |
figure height |
object |
dataframe of enrichment results |
alpha |
transparency alpha |
font |
y font of y axis |
font.size |
font size for xlim or ylim |
Kai Guo
## Not run:
hsako<-buildAnnot(species="human",keytype="SYMBOL",anntype = "KEGG")
gene=sample(unique(hsako$GeneID),1000)
res<-richKEGG(gene,kodata = hsako)
ggbar(res)
## End(Not run)
## Not run:
hsako<-buildAnnot(species="human",keytype="SYMBOL",anntype = "KEGG")
gene=sample(unique(hsako$GeneID),1000)
res<-richKEGG(gene,kodata = hsako)
ggbar(result(res))
## End(Not run)
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