ggbar-methods: ggbar method

In hurlab/RichR: Function Enrichment analysis and Network construction

ggbar method

Description

ggbar

Usage

ggbar(
  object,
  top = 50,
  pvalue = 0.05,
  padj = NULL,
  order = FALSE,
  usePadj = TRUE,
  fontsize.x = 10,
  fontsize.y = 10,
  short = FALSE,
  fontsize.text = 3,
  angle = 0,
  orderp = FALSE,
  filename = NULL,
  width = 10,
  height = 8,
  horiz = TRUE,
  ...
)

Arguments

object	enrichment result or data.frame
top	number of terms you want to display,
pvalue	cutoff value of pvalue (if padj set as NULL)
order	order by Term or richFactor
usePadj	use p adjust value as color or not (should use with padj)
fontsize.x	fontsize of x axis
fontsize.y	fontsize of y axis
short	automatic short name or not
orderp	order by p value(adjusted p value)
filename	figure output name
width	figure width
height	figure height
horiz	horiz or not
low	low color
high	high color
alpha	transparency alpha
font.x	font of x axis
font	y font of y axis
font.size	font size for xlim or ylim

Value

ggplot2 object

Author(s)

Kai Guo

Examples

## Not run: 
  hsako<-buildAnnot(species="human",keytype="SYMBOL",anntype = "KEGG")
  gene=sample(unique(hsako$GeneID),1000)
  res<-richKEGG(gene,kodata = hsako)
  ggbar(res)

## End(Not run)

hurlab/RichR documentation built on Feb. 5, 2024, 8:07 p.m.