Files in inbo/INLA
Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations
.Rbuildignore
.gitignore
BinaryFiles
DESCRIPTION
NAMESPACE
NAMESPACE.backup
NAMESPACE.init
R/Makefile
R/ar.R
R/barrier.R
R/binary.R
R/changelog.R
R/collect.results.R
R/compare.results.R
R/contributed-1.R
R/coxph.R
R/cpo.R
R/create.data.file.R
R/cut.R
R/cygwin.R
R/debug.graph.R
R/dev.new.R
R/display.matrix.R
R/doc.R
R/expand.dataframe.R
R/export-class.R
R/f.R
R/fgn.R
R/finn.R
R/fmesher-io.R
R/fmesher.R
R/graph.convert.R
R/graph.matrix.R
R/group.R
R/hyper.R
R/hyperpar.R
R/idx.R
R/inla.R
R/inlaEnv.R
R/interpret.formula.R
R/jp.R
R/knmodels.R
R/knmodels.sample.R
R/lattice2node.R
R/lincomb.R
R/link-functions.R
R/list-models.R
R/load.R
R/make-man-pages
R/make-man-pages.timestamp
R/marginal.R
R/mdata.R
R/merge.R
R/mesh.R
R/mesh.components.R
R/meshassessment.R
R/meshbuilder.R
R/model-wrapper.R
R/models-generate.R
R/models.R
R/nmix.lambda.fitted.R
R/obsolete.R
R/obsolete/contributed-1.R
R/options.R
R/os.R
R/over_sp_mesh.R
R/pardiso.R
R/pc-alphaw.R
R/pc-ar.R
R/pc-bym.R
R/pc-cor0.R
R/pc-cor1.R
R/pc-cormat.R
R/pc-gamma.R
R/pc-gammacount.R
R/pc-gev.R
R/pc-multvar.R
R/pc-prec.R
R/pc-rho0.R
R/pc-rho1.R
R/pc-t.R
R/plot.R
R/posterior.sample.R
R/print.R
R/priors.used.R
R/q.R
R/qinv.R
R/qreordering.R
R/qsample.R
R/qsolve.R
R/quantile-regression.R
R/read.graph.R
R/remote.R
R/reorderings.R
R/rerun.R
R/residuals.R
R/rgeneric.R
R/sampler.R
R/sandbox.R
R/scale.model.R
R/sections.R
R/sensitivity.R
R/set.default.arguments.R
R/sm.R
R/spde.common.R
R/spde1.R
R/spde2.R
R/spde3.R
R/spmesh.R
R/startup.R
R/summary.R
R/surv.R
R/upgrade.R
R/utils.R
R/version.R
data/BivMetaAnalysis.rda
data/Cancer.rda
data/Drivers.rda
data/Epil.rda
data/Germany.rda
data/Kidney.rda
data/Leuk.rda
data/Munich.rda
data/Oral.rda
data/PRborder.rda
data/PRprec.rda
data/SPDEtoy.rda
data/Salm.rda
data/Scotland.rda
data/Seeds.rda
data/Surg.rda
data/SurvSim.rda
data/Tokyo.rda
data/Zambia.rda
demo/00Index
demo/Bym.R
demo/Epil.R
demo/Graph.R
demo/Leuk.R
demo/LeukPCprior.R
demo/SPDEhowto.R
demo/Tokyo-compare.R
demo/Tokyo.R
demo/mesh2d.R
demo/mesh2d_run_me.R
demo/rgeneric.R
inst/CITATION
inst/COPYRIGHTS
inst/Makefile
inst/NEWS.Rd
inst/bin/linux/32bit/fmesher
inst/bin/linux/32bit/fmesher.run
inst/bin/linux/32bit/inla
inst/bin/linux/32bit/inla.run
inst/bin/linux/32bit/libX11.so.6
inst/bin/linux/32bit/libXau.so.6
inst/bin/linux/32bit/libXdmcp.so.6
inst/bin/linux/32bit/libc.so.6
inst/bin/linux/32bit/libdl.so.2
inst/bin/linux/32bit/libgcc_s.so.1
inst/bin/linux/32bit/libgfortran.so.3
inst/bin/linux/32bit/libgomp.so.1
inst/bin/linux/32bit/libgsl.so.19
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inst/bin/linux/32bit/libm.so.6
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inst/bin/linux/32bit/libquadmath.so.0
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inst/bin/linux/64bit/fmesher
inst/bin/linux/64bit/fmesher.run
inst/bin/linux/64bit/fmesher.static
inst/bin/linux/64bit/inla
inst/bin/linux/64bit/inla.mkl
inst/bin/linux/64bit/inla.mkl.run
inst/bin/linux/64bit/inla.mkl.static
inst/bin/linux/64bit/inla.run
inst/bin/linux/64bit/inla.static
inst/bin/linux/64bit/libR.so
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inst/bin/linux/64bit/librt.so.1
inst/bin/linux/64bit/libstdc++.so.6
inst/bin/linux/64bit/libtinfo.so.5
inst/bin/linux/64bit/libtre.so.5
inst/bin/linux/64bit/libxcb.so.1
inst/bin/linux/64bit/libz.so.1
inst/bin/mac/32bit/fmesher
inst/bin/mac/32bit/fmesher.run
inst/bin/mac/32bit/inla
inst/bin/mac/32bit/inla.run
inst/bin/mac/32bit/libX11.6.dylib
inst/bin/mac/32bit/libXau.6.dylib
inst/bin/mac/32bit/libXdmcp.6.dylib
inst/bin/mac/32bit/libgcc_s.1.dylib
inst/bin/mac/32bit/libgcc_s_x86_64.1.dylib
inst/bin/mac/32bit/libgfortran.3.dylib
inst/bin/mac/32bit/libgomp.1.dylib
inst/bin/mac/32bit/libquadmath.0.dylib
inst/bin/mac/32bit/libstdc++.6.dylib
inst/bin/mac/32bit/libxcb.1.dylib
inst/bin/mac/64bit/first/dummy
inst/bin/mac/64bit/fmesher
inst/bin/mac/64bit/fmesher.run
inst/bin/mac/64bit/inla
inst/bin/mac/64bit/inla.mkl
inst/bin/mac/64bit/inla.mkl.run
inst/bin/mac/64bit/inla.run
inst/bin/mac/64bit/libR.dylib
inst/bin/mac/64bit/libRblas.dylib
inst/bin/mac/64bit/libRmath.dylib
inst/bin/mac/64bit/libX11.6.dylib
inst/bin/mac/64bit/libXau.6.dylib
inst/bin/mac/64bit/libXdmcp.6.dylib
inst/bin/mac/64bit/libgcc_s.1.dylib
inst/bin/mac/64bit/libgcc_s_x86_64.1.dylib
inst/bin/mac/64bit/libgfortran.3.dylib
inst/bin/mac/64bit/libgfortran.5.dylib
inst/bin/mac/64bit/libgomp.1.dylib
inst/bin/mac/64bit/libpardiso.dylib
inst/bin/mac/64bit/libquadmath.0.dylib
inst/bin/mac/64bit/libreadline.5.2.dylib
inst/bin/mac/64bit/libstdc++.6.dylib
inst/bin/mac/64bit/libxcb.1.dylib
inst/bin/pardiso/libnopardiso/linux/libpardiso.so
inst/bin/pardiso/libnopardiso/mac/libpardiso.dylib
inst/bin/pardiso/libnopardiso/windows/dummy
inst/bin/pardiso/libpardiso/linux/libpardiso.so
inst/bin/pardiso/libpardiso/mac/libpardiso.dylib
inst/bin/pardiso/libpardiso/windows/dummy
inst/bin/pardiso/libpardiso/windows/libpardiso600-WIN-X86-64-RINLA.dll
inst/bin/remote/dot.inlarc-example
inst/bin/remote/dot.inlarc-example-windows
inst/bin/remote/inla.q
inst/bin/remote/inla.q.cygwin
inst/bin/remote/inla.remote
inst/bin/remote/inla.remote.cygwin
inst/bin/remote/inla.submit
inst/bin/remote/inla.submit.cygwin
inst/bin/remote/ssh-copy-id
inst/bin/windows/32bit/R.dll
inst/bin/windows/32bit/Rblas.dll
inst/bin/windows/32bit/Rgraphapp.dll
inst/bin/windows/32bit/Riconv.dll
inst/bin/windows/32bit/Rlapack.dll
inst/bin/windows/32bit/advapi32.dll
inst/bin/windows/32bit/dummy
inst/bin/windows/32bit/fmesher.exe
inst/bin/windows/32bit/inla.exe
inst/bin/windows/32bit/libRmath-julia.dll
inst/bin/windows/32bit/libpardiso.dll
inst/bin/windows/64bit/R.dll
inst/bin/windows/64bit/Rblas.dll
inst/bin/windows/64bit/Rgraphapp.dll
inst/bin/windows/64bit/Riconv.dll
inst/bin/windows/64bit/Rlapack.dll
inst/bin/windows/64bit/advapi32.dll
inst/bin/windows/64bit/dummy
inst/bin/windows/64bit/fmesher.exe
inst/bin/windows/64bit/inla.exe
inst/bin/windows/64bit/libRmath-julia.dll
inst/bin/windows/64bit/libpardiso.dll
inst/demodata/Bym-map.R
inst/demodata/Bym.map
inst/demodata/Leuk-map.R
inst/demodata/Leuk.graph
inst/demodata/Leuk.map
inst/demodata/Leuk.names.regions
inst/demodata/data_fisher2.rds
inst/demodata/ddr.graph
inst/demodata/germany.graph
inst/demodata/munich.graph
inst/demodata/scotland.graph
inst/demodata/zambia.graph
inst/doc/TRD20160926weather.RData
inst/doc/latent/ar.pdf
inst/doc/latent/ar1.pdf
inst/doc/latent/ar1c.pdf
inst/doc/latent/besag.pdf
inst/doc/latent/besag2.pdf
inst/doc/latent/besagproper-OLD.pdf
inst/doc/latent/besagproper.pdf
inst/doc/latent/besagproper2.pdf
inst/doc/latent/bym.pdf
inst/doc/latent/bym2.pdf
inst/doc/latent/clinear.pdf
inst/doc/latent/crw2.pdf
inst/doc/latent/dmatern.pdf
inst/doc/latent/fgn.pdf
inst/doc/latent/generic0.pdf
inst/doc/latent/generic1.pdf
inst/doc/latent/generic2.pdf
inst/doc/latent/generic3.pdf
inst/doc/latent/iid.pdf
inst/doc/latent/iid123d.pdf
inst/doc/latent/indep.pdf
inst/doc/latent/intslope.pdf
inst/doc/latent/linear.pdf
inst/doc/latent/log1exp.pdf
inst/doc/latent/logdist.pdf
inst/doc/latent/matern2d.pdf
inst/doc/latent/meb.pdf
inst/doc/latent/mec-details.pdf
inst/doc/latent/mec.pdf
inst/doc/latent/ou.pdf
inst/doc/latent/rgeneric.pdf
inst/doc/latent/rw1.pdf
inst/doc/latent/rw2.pdf
inst/doc/latent/rw2d-model.pdf
inst/doc/latent/rw2d.pdf
inst/doc/latent/rw2diid.pdf
inst/doc/latent/rw2dx3-model.pdf
inst/doc/latent/seasonal.pdf
inst/doc/latent/sigm.pdf
inst/doc/latent/slm.pdf
inst/doc/latent/wishard.pdf
inst/doc/latent/z.pdf
inst/doc/likelihood/beta.pdf
inst/doc/likelihood/betabinomial.pdf
inst/doc/likelihood/binomial.pdf
inst/doc/likelihood/cbinomial.pdf
inst/doc/likelihood/cenpoisson.pdf
inst/doc/likelihood/circular-normal.pdf
inst/doc/likelihood/coxph.pdf
inst/doc/likelihood/exponential.pdf
inst/doc/likelihood/exponentialsurv.pdf
inst/doc/likelihood/gamma.pdf
inst/doc/likelihood/gammacount.pdf
inst/doc/likelihood/gammasurv.pdf
inst/doc/likelihood/gaussian.pdf
inst/doc/likelihood/genPareto.pdf
inst/doc/likelihood/gev.pdf
inst/doc/likelihood/gpoisson.pdf
inst/doc/likelihood/iidexp.pdf
inst/doc/likelihood/iidgamma.pdf
inst/doc/likelihood/iidlogitbeta.pdf
inst/doc/likelihood/kumar.pdf
inst/doc/likelihood/laplace.pdf
inst/doc/likelihood/likelihood-example.pdf
inst/doc/likelihood/logistic.pdf
inst/doc/likelihood/loglogistic.pdf
inst/doc/likelihood/loglogisticsurv.pdf
inst/doc/likelihood/lognormal.pdf
inst/doc/likelihood/lognormalsurv.pdf
inst/doc/likelihood/nbinomial.pdf
inst/doc/likelihood/nmix.pdf
inst/doc/likelihood/nmixnb.pdf
inst/doc/likelihood/poisson.pdf
inst/doc/likelihood/pom.pdf
inst/doc/likelihood/qkumar.pdf
inst/doc/likelihood/qloglogistic.pdf
inst/doc/likelihood/qloglogisticsurv.pdf
inst/doc/likelihood/qpoisson.pdf
inst/doc/likelihood/simplex.pdf
inst/doc/likelihood/sn.pdf
inst/doc/likelihood/sn2.pdf
inst/doc/likelihood/stochvolgaussian.pdf
inst/doc/likelihood/stochvolnig.pdf
inst/doc/likelihood/stochvolt.pdf
inst/doc/likelihood/student-t.pdf
inst/doc/likelihood/tstrata.pdf
inst/doc/likelihood/weibull.pdf
inst/doc/likelihood/weibullcure-background.pdf
inst/doc/likelihood/weibullcure.pdf
inst/doc/likelihood/wrapped-cauchy.pdf
inst/doc/likelihood/zeroinflated.pdf
inst/doc/likelihood/zeroinflatedbetabinomial2.pdf
inst/doc/link/logoffset.pdf
inst/doc/link/robit.pdf
inst/doc/manual/INLA.pdf
inst/doc/prior/betacorrelation.pdf
inst/doc/prior/dirichlet.pdf
inst/doc/prior/expression.pdf
inst/doc/prior/gaussian.pdf
inst/doc/prior/logitbeta.pdf
inst/doc/prior/pc.alphaw.pdf
inst/doc/prior/pc.cor0.pdf
inst/doc/prior/pc.cor1.pdf
inst/doc/prior/pc.dof.pdf
inst/doc/prior/pc.fgnh
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inst/doc/prior/pc.gevtail.pdf
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inst/doc/prior/prior-flat.pdf
inst/doc/prior/prior-loggamma.pdf
inst/doc/prior/prior-logtnorm.pdf
inst/doc/prior/table.pdf
inst/doc/prior/various-flat.pdf
inst/exampledata/cd4/cd4.R
inst/exampledata/cd4/jointdataCD4.rds
inst/exampledata/psa/jointdataPSA.rds
inst/exampledata/psa/psa.R
inst/tests/run-all.R
inst/tests/test-A.R
inst/tests/test-ar.R
inst/tests/test-argument-link.R
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inst/tests/test-besagproper.R
inst/tests/test-besagproper2.R
inst/tests/test-beta.R
inst/tests/test-betabinomial.R
inst/tests/test-bym.R
inst/tests/test-bym2.R
inst/tests/test-cbinomial.R
inst/tests/test-circular.R
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inst/tests/test-control-mode.R
inst/tests/test-copy.R
inst/tests/test-coxph.R
inst/tests/test-cpo-po-mlik.R
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inst/tests/test-gamma.R
inst/tests/test-generic.R
inst/tests/test-poisson.R
inst/tests/test-prior.R
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man/BivMetaAnalysis.Rd
man/Cancer.Rd
man/Drivers.Rd
man/Epil.Rd
man/Germany.Rd
man/INLA-package.Rd
man/Kidney.Rd
man/Leuk.Rd
man/Munich.Rd
man/Oral.Rd
man/PRborder.Rd
man/PRprec.Rd
man/SPDEtoy.Rd
man/Salm.Rd
man/Scotland.Rd
man/Seeds.Rd
man/Surg.Rd
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man/pc-cor1.Rd
man/pc-cormat.Rd
man/pc-gamma.Rd
man/pc-gammacount.Rd
man/pc-gev.Rd
man/pc-multvar.Rd
man/pc-prec.Rd
man/pc-rho0.Rd
man/pc-rho1.Rd
man/pc-t.Rd
man/plot.Rd
man/plot.inla.CRS.Rd
man/plot.inla.mesh.Rd
man/plot.inla.trimesh.Rd
man/posterior.sample.Rd
man/print.Rd
man/priors.used.Rd
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man/qinv.Rd
man/qreordering.Rd
man/qsample.Rd
man/qsolve.Rd
man/rbind.inla.data.stack.info.Rd
man/read.graph.Rd
man/remote.Rd
man/reorderings.Rd
man/rerun.Rd
man/residuals.Rd
man/rgeneric.Rd
man/sampler.Rd
man/scale.model.Rd
man/sensitivity.Rd
man/sm.Rd
man/summary.Rd
man/summary.inla.mesh.Rd
man/surv.Rd
man/upgrade.Rd
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rinla.Rproj
vignettes/Makefile
vignettes/Old/SPDE1d.Rmd
vignettes/Old/SPDEhowto.Rmd
vignettes/SPDE1d.Rmd
vignettes/SPDE1d.Rnw
vignettes/SPDE1d.html
vignettes/SPDE1d.pdf
vignettes/SPDEhowto.Rmd
vignettes/SPDEhowto.Rnw
vignettes/SPDEhowto.html
vignettes/SPDEhowto.pdf
vignettes/TRD20160926weather.RData
vignettes/conditional-sampling.Rmd
vignettes/conditional-sampling.pdf
vignettes/conditional_logit.Rmd
vignettes/conditional_logit.pdf
vignettes/int-design.Rmd
vignettes/int-design.pdf
vignettes/isbaspde.R
vignettes/isbaspde.pdf
vignettes/multinomial-img/MSE.iid.jpeg
vignettes/multinomial-img/beta.confidence.jpeg
vignettes/multinomial-img/conf.iid.jpeg
vignettes/multinomial-img/diff.confidence.jpeg
vignettes/multinomial.Rmd
vignettes/multinomial.bib
vignettes/multinomial.pdf
vignettes/rgeneric.Rmd
vignettes/rgeneric.pdf
vignettes/rmarkdown-cheatsheet.pdf
vignettes/scale-model.Rnw
vignettes/scale-model.pdf
vignettes/shs.bib
vignettes/spde-tutorial.bib
vignettes/spde-tutorial.pdf
vignettes/stack-with-factors.Rmd
vignettes/stack-with-factors.pdf
