ManualAnnotation: Manual annotation tool via shiny This function takes a seurat...
In jbergenstrahle/STUtility: Analysis and visualization of Spatial Transcriptomics data
ManualAnnotation R Documentation
Manual annotation tool via shiny
This function takes a seurat object with stored image locations and opens up the manual selection tool in the default browser
Description
Manual annotation tool via shiny
This function takes a seurat object with stored image locations and opens up the manual selection tool in the default browser
Usage
ManualAnnotation(object, type = NULL, res = 1000, verbose = FALSE)
Arguments
object
Seurat object
type
Input image type, e.g. "masked" or "raw"
res
Tissue HE image width in pixels
verbose
Print messages
jbergenstrahle/STUtility documentation built on March 14, 2023, 7:15 a.m.
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| ManualAnnotation | R Documentation |
Manual annotation tool via shiny This function takes a seurat object with stored image locations and opens up the manual selection tool in the default browser
Description
Manual annotation tool via shiny This function takes a seurat object with stored image locations and opens up the manual selection tool in the default browser
Usage
ManualAnnotation(object, type = NULL, res = 1000, verbose = FALSE)
Arguments
object |
Seurat object |
type |
Input image type, e.g. "masked" or "raw" |
res |
Tissue HE image width in pixels |
verbose |
Print messages |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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