MergeSTData: Merge two or more Seurat objects containing Staffli image...

In jbergenstrahle/STUtility: Analysis and visualization of Spatial Transcriptomics data

Merge two or more Seurat objects containing Staffli image data

Description

Merges Seurat objects containing Spatial Transcriptomics data while making sure that the images and spot coordinates are correctly structures. If you use the default merge function you will not be able to use any of the STUtility visualization methods on the output object.

Usage

MergeSTData(
  x = NULL,
  y = NULL,
  add.spot.ids = NULL,
  merge.data = TRUE,
  project = "SeuratProject",
  ...
)

Arguments

x	Seurat object
y	Seurat object (or list of multiple Seurat obejcts)
add.spot.ids	A character vector of length(x = c(x, y)). Appends the corresponding values to the start of each objects' spot names.
merge.data	Merge the data slots instead of just merging the counts (which requires renormalization). This is recommended if the same normalization approach was applied to all objects.
project	Sets the project name for the Seurat object.
...	Arguments passed to other methods

jbergenstrahle/STUtility documentation built on March 14, 2023, 7:15 a.m.