rnmf: Run NMF with ica init

In jbergenstrahle/STUtility: Analysis and visualization of Spatial Transcriptomics data

Run NMF with ica init

Description

Run NMF with ica init

Usage

rnmf(
  A,
  k,
  alpha = 0,
  init = "ica",
  n.cores = 1,
  loss = "mse",
  max.iter = 500,
  ica.fast = F
)

Arguments

A	Expression matrix
k	= Number of factors
alpha	Alpha parameter value
init	Method to initiate NMF by
n.cores	Number of threads to run
loss	Loss method
max.iter	Maximum number of iterations for NMF
ica.fast	Should fast ica be run?

jbergenstrahle/STUtility documentation built on March 14, 2023, 7:15 a.m.