scatter_HE | R Documentation |
The defualt segmentation uses the HE image as input and defines any pixel with an intensity value below a threshold to be a point. The number of points can be downsampeld to limit the maximum number.
scatter_HE( object, type = "masked.masks", sample.index = NULL, limit = 0.5, maxnum = 50000, edges = FALSE, custom.edge.detector = NULL )
object |
Staffli object |
type |
Sets the image type to run segmentation on |
sample.index |
Integer value specifying the index of the sample to be analyzed |
limit |
Sets the intensity threshold in the interval [0, 1] |
maxnum |
Integer value specifying the maximum number of points |
edges |
Extracts the coordinates of the edges instead |
custom.edge.detector |
Custom function used to detect edges |
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