annotate_cna: Annotate CNAs with gene information
In jmonlong/scCNAutils: Functions to analyze copy number aberrations in single-cell data
annotate_cna R Documentation
Annotate CNAs with gene information
Description
Add columns with the names of the genes in the region, total
and expressed genes only.
Usage
annotate_cna(cna_df, gene_info, cancer_genes = NULL)
Arguments
cna_df
a data.frame with CNA calls. E.g. data.frames created
by call_cna_* functions.
gene_info
a data.frame with gene information created by the
gene_info function
cancer_genes
a vector with the names of cancer genes. For an
additional column. Use if non-NULL.
Details
The subset of "expressed" genes is made out of genes with
non-zero expression in at least 10
expression higher than 0.5.
Value
the input data.frame with two new columns with all/expressed genes.
Author(s)
Jean Monlong
jmonlong/scCNAutils documentation built on May 3, 2022, 4:34 a.m.
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| annotate_cna | R Documentation |
Annotate CNAs with gene information
Description
Add columns with the names of the genes in the region, total and expressed genes only.
Usage
annotate_cna(cna_df, gene_info, cancer_genes = NULL)
Arguments
cna_df |
a data.frame with CNA calls. E.g. data.frames created
by |
gene_info |
a data.frame with gene information created by the
|
cancer_genes |
a vector with the names of cancer genes. For an additional column. Use if non-NULL. |
Details
The subset of "expressed" genes is made out of genes with non-zero expression in at least 10 expression higher than 0.5.
Value
the input data.frame with two new columns with all/expressed genes.
Author(s)
Jean Monlong
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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