API for jmonlong/scCNAutils
Functions to analyze copy number aberrations in single-cell data

Global functions
annotate_cna	Man page Source code
annotate_cna_seg	Man page Source code
auto_cna_call	Man page Source code
auto_cna_signal	Man page Source code
binGenesC	Man page Source code
bin_genes	Man page Source code
call_cna	Man page Source code
call_cna_multisamps	Man page Source code
cnaHMM	Man page Source code
convert_to_coord	Man page Source code
define_cycling_cells	Man page Source code
find_communities	Man page Source code
gene_info	Man page Source code
make_metacells	Man page Source code
merge_samples	Man page Source code
metacells_cluster	Man page Source code
metacells_subsample	Man page Source code
norm_ge	Man page Source code
norm_ge_tmm	Man page Source code
norm_ge_total	Man page Source code
plot_aneuploidy	Man page Source code
plot_cna	Man page Source code
plot_communities	Man page Source code
plot_heatmap	Man page Source code
plot_qc_cells	Man page Source code
plot_tsne	Man page Source code
plot_umap	Man page Source code
qc_cells	Man page Source code
qc_filter	Man page Source code
read_mtx	Man page Source code
rebin_cov	Man page Source code
rm_cv_outliers	Man page Source code
run_louvain	Man page Source code
run_pca	Man page Source code
run_tsne	Man page Source code
run_umap	Man page Source code
scCNAutils	Man page
scCNAutils-package	Man page
smoothMovingC	Man page Source code
smooth_movingw	Man page Source code
tmmNormC	Man page Source code
tsne_browser	Man page Source code
umap_browser	Man page Source code
winsor	Man page Source code
zscore	Man page Source code

jmonlong/scCNAutils documentation built on May 3, 2022, 4:34 a.m.

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