run_louvain: Python wrapper to run Louvain

In jmonlong/scCNAutils: Functions to analyze copy number aberrations in single-cell data

Python wrapper to run Louvain

Description

Louvain on an igraph object.

Usage

run_louvain(graph, gamma = 1, nreps = 1, nb_cores = 1)

Arguments

graph	a igraph object
gamma	a vector of gamma. Default 1.
nreps	the number of repetition for each gamma, Default 1.
nb_cores	the number of processors to use. Default is 1.

Details

This functions depends on Python and louvain being installed. Make sure igraph, louvain and numpy are installed. For example with something like: 'pip install python-igraph louvain numpy'.

Value

a list with

comm	a data.frame with the community for each gamma
gamma	the input gammas corresponding to the columns of comm

Author(s)

Jean Monlong

jmonlong/scCNAutils documentation built on Feb. 8, 2025, 8:09 a.m.