smooth_movingw: Moving-window smoothing
In jmonlong/scCNAutils: Functions to analyze copy number aberrations in single-cell data
View source: R/smooth_movingw.R
smooth_movingw R Documentation
Moving-window smoothing
Description
The expression/score of a gene/bin is replaced by a summary of bins around.
For example the median across 3 bins.
Usage
smooth_movingw(df, wsize = 3, nb_cores = 1, FUN = stats::median, rcpp = FALSE)
Arguments
df
the input data.frame with coordinate columns (chr, start, end) and then
one column per cell
wsize
the window size. Default is 3.
nb_cores
the number of processors to use.
FUN
the function to apply to each window. Default is median.
rcpp
use Rcpp function. Default is FALSE. More memory-efficient and
faster when running on one core.
Value
a data.frame with smoothed signal.
Author(s)
Jean Monlong
jmonlong/scCNAutils documentation built on May 3, 2022, 4:34 a.m.
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View source: R/smooth_movingw.R
| smooth_movingw | R Documentation |
Moving-window smoothing
Description
The expression/score of a gene/bin is replaced by a summary of bins around. For example the median across 3 bins.
Usage
smooth_movingw(df, wsize = 3, nb_cores = 1, FUN = stats::median, rcpp = FALSE)
Arguments
df |
the input data.frame with coordinate columns (chr, start, end) and then one column per cell |
wsize |
the window size. Default is 3. |
nb_cores |
the number of processors to use. |
FUN |
the function to apply to each window. Default is median. |
rcpp |
use Rcpp function. Default is FALSE. More memory-efficient and faster when running on one core. |
Value
a data.frame with smoothed signal.
Author(s)
Jean Monlong
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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