bin_genes: Merge consecutive genes into expressed bins
In jmonlong/scCNAutils: Functions to analyze copy number aberrations in single-cell data
bin_genes R Documentation
Merge consecutive genes into expressed bins
Description
Merge consecutive genes into expressed bins
Usage
bin_genes(ge_df, mean_exp = 3, nb_cores = 1, rcpp = FALSE)
Arguments
ge_df
the input gene expression with coordinate columns (chr, start, end)
and then one column per cell.
mean_exp
the desired minimum mean expression in the bin.
nb_cores
the number of processors to use.
rcpp
use Rcpp function. Default is FALSE. More memory-efficient and
faster when running on one core.
Value
a data.frame with bin expression.
Author(s)
Jean Monlong
jmonlong/scCNAutils documentation built on May 3, 2022, 4:34 a.m.
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| bin_genes | R Documentation |
Merge consecutive genes into expressed bins
Description
Merge consecutive genes into expressed bins
Usage
bin_genes(ge_df, mean_exp = 3, nb_cores = 1, rcpp = FALSE)
Arguments
ge_df |
the input gene expression with coordinate columns (chr, start, end) and then one column per cell. |
mean_exp |
the desired minimum mean expression in the bin. |
nb_cores |
the number of processors to use. |
rcpp |
use Rcpp function. Default is FALSE. More memory-efficient and faster when running on one core. |
Value
a data.frame with bin expression.
Author(s)
Jean Monlong
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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